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Linux is a family of open source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991 by Linus Torvalds. Linux is typically packaged in a Linux distribution (or distro for short).
Distributions include the Linux kernel and supporting system software and libraries, many of which are provided by the GNU Project. Many Linux distributions use the word "Linux" in their name, but the Free Software Foundation uses the name GNU/Linux to emphasize the importance of GNU software, causing some controversy.
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It’s a matter of ideology.
This being said I think for you installing “official” apps via flatpak might be the best compromise. You gets apps that don’t need tinkering with and “just work” while those apps are isolated from the rest of your system via flatpak isolation.
If you are going into a period low fiddle time this might be your best bet ^
That makes sense. I still have windows installed as a backup but I'd really like to get through the program with Linux only. I've been going through the software manager first and then on to the official apps from their site if there was no options
As with everything - it depends. Sometimes the FOSS versions are not very good, sometimes they are better than the official. Sometimes they are better for privacy, sometimes they make no real difference at all, sometimes the web version is better. Sometimes there is no FOSS version, sometimes the official one does not support Linux.
You are going to need to go on a case by case bases and decide each time.