AFAIK this app uses your login password to decrypt if available. if you have set the PC to some sort of passwordless login, it can't decrypt and if you save a password in that state it becomes a different keyring. only one key ring can be default though and thus starts the battle of keyrings
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It's been weird like that for as long as I've been daily driving Linux. I typically use either Cinnamon or XFCE, so I always figured it just didn't like the cross-DE thing, but overall it's always seemed like a mess to me.
I used to have weirdness with it as well, but its gone away lately. Very frustrating.
Wild guess, but is your home on a separate disk/partition and getting mounted late or something?
I do have two mounted extra drives but the os is on the main one. But perhaps I can experiment a little with that, sounds a likely as anything else to be the culprit
Try to note which apps aren't working with the keyring. There might be a link between them.
Also, as somebody else pointed out: do any of the keyrings lack a password?
Then, how long is the keyring supposed to be open? And do you have a default keyring configured?